If you are reporting a bug please open an issue below:
If you have other questions/suggestions on how to use
bio use the discussion board:
pip install bio --upgrade
Some tasks (
bio explain) need access to additional data. Install the required databases with:
To execute a batch of tests run
Tests depend on the availability of a number of online services. Some test fail whenever the corresponding remote data service is unavailable. Connection problems are typically corrected within a short period of time.
bio followed by a task (
taxon) then followed by one or more flags or options.
bio fetch NC_045512 > genome.gb bio fasta genome.gb bio gff genome.gb --type CDS bio taxon 2697049 --lineage
You can get help on any command by just entering it
bio bio fasta bio taxon
each line above will print a help on the task usage.
Use the discussion board for other questions:
Tasks will have separate help pages that are shown when the command is run with no parameters (or using the